Packages

c

com.jnpersson.kmers.minimizer

ExtendedFormat

class ExtendedFormat extends SplitterFormat[ExtendedTable]

Linear Supertypes
SplitterFormat[ExtendedTable], AnyRef, Any
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Inherited
  1. ExtendedFormat
  2. SplitterFormat
  3. AnyRef
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new ExtendedFormat()

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @IntrinsicCandidate()
  6. def decorate(priorities: ExtendedTable, props: Properties): MinimizerPriorities
    Definition Classes
    SplitterFormat
  7. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  8. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  9. final val extendMethodKey: String("extendMethod")
    Attributes
    protected
  10. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @IntrinsicCandidate()
  11. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @IntrinsicCandidate()
  12. val id: String
    Definition Classes
    ExtendedFormat → SplitterFormat
  13. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  14. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  15. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @IntrinsicCandidate()
  16. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @IntrinsicCandidate()
  17. def read(location: String, props: Properties)(implicit spark: SparkSession): ExtendedTable
    Definition Classes
    ExtendedFormat → SplitterFormat
  18. def readAndDecorate(location: String, props: Properties)(implicit spark: SparkSession): MinimizerPriorities
    Definition Classes
    SplitterFormat
  19. def readSplitter(location: String, props: Properties)(implicit spark: SparkSession): AnyMinSplitter
    Definition Classes
    SplitterFormat
  20. val std: StandardFormat
  21. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  22. def toString(): String
    Definition Classes
    AnyRef → Any
  23. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  24. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  25. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  26. def write(priorities: ExtendedTable, props: Properties, location: String)(implicit spark: SparkSession): Unit

    Write a MinTable's minimizer ordering to a file

    Write a MinTable's minimizer ordering to a file

    priorities

    The ordering to write

    props

    Properties to store flags in

    location

    Prefix of the location to write to. A suffix will be appended to this name.

    Definition Classes
    ExtendedFormat → SplitterFormat

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from SplitterFormat[ExtendedTable]

Inherited from AnyRef

Inherited from Any

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