Packages

t

com.jnpersson.kmers.minimizer

MinimizerSource

trait MinimizerSource extends AnyRef

A method for obtaining a set of minimizers for given values of k and m. The sets obtained should be universal hitting sets (UHSs), or otherwise guaranteed to hit every k-mer in practice. Only m <= 15 can be loaded in this way.

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Abstract Value Members

  1. abstract def load(k: Int, m: Int)(implicit spark: SparkSession): Array[Int]

    Obtain the encoded minimizers in order

Concrete Value Members

  1. final def !=(arg0: Any): Boolean
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  2. final def ##(): Int
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  10. final def isInstanceOf[T0]: Boolean
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  11. final def ne(arg0: AnyRef): Boolean
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  14. final def synchronized[T0](arg0: ⇒ T0): T0
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  15. def theoreticalMax(m: Int): Long

    The maximum possible number of minimizers for the given m

  16. def toSplitter(priorities: MinimizerPriorities, k: Int)(implicit spark: SparkSession): MinSplitter[_ <: MinimizerPriorities]

    Convert a MinimizerPriorities to a MinSplitter using this source

  17. def toString(): String
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  18. final def wait(arg0: Long, arg1: Int): Unit
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  19. final def wait(arg0: Long): Unit
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  20. final def wait(): Unit
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