Packages

final class MinimizerPositions extends IndexedSeq[NTBitArray]

This class adapts KmerTable for use as a list of minimizers of some underlying sequence. This is more memory efficient than representing each NTBitArray as an object by itself. Each entry in the KmerTable corresponds to a position in a sequence. A single tag indicates whether the minimizer is valid or not.

Linear Supertypes
IndexedSeq[NTBitArray], IndexedSeqLike[NTBitArray, IndexedSeq[NTBitArray]], Seq[NTBitArray], SeqLike[NTBitArray, IndexedSeq[NTBitArray]], GenSeq[NTBitArray], GenSeqLike[NTBitArray, IndexedSeq[NTBitArray]], Iterable[NTBitArray], IterableLike[NTBitArray, IndexedSeq[NTBitArray]], Equals, GenIterable[NTBitArray], GenIterableLike[NTBitArray, IndexedSeq[NTBitArray]], Traversable[NTBitArray], GenTraversable[NTBitArray], GenericTraversableTemplate[NTBitArray, IndexedSeq], TraversableLike[NTBitArray, IndexedSeq[NTBitArray]], GenTraversableLike[NTBitArray, IndexedSeq[NTBitArray]], Parallelizable[NTBitArray, ParSeq[NTBitArray]], TraversableOnce[NTBitArray], GenTraversableOnce[NTBitArray], FilterMonadic[NTBitArray, IndexedSeq[NTBitArray]], HasNewBuilder[NTBitArray, IndexedSeq[com.jnpersson.kmers.util.NTBitArray] @scala.annotation.unchecked.uncheckedVariance], PartialFunction[Int, NTBitArray], (Int) ⇒ NTBitArray, AnyRef, Any
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Inherited
  1. MinimizerPositions
  2. IndexedSeq
  3. IndexedSeqLike
  4. Seq
  5. SeqLike
  6. GenSeq
  7. GenSeqLike
  8. Iterable
  9. IterableLike
  10. Equals
  11. GenIterable
  12. GenIterableLike
  13. Traversable
  14. GenTraversable
  15. GenericTraversableTemplate
  16. TraversableLike
  17. GenTraversableLike
  18. Parallelizable
  19. TraversableOnce
  20. GenTraversableOnce
  21. FilterMonadic
  22. HasNewBuilder
  23. PartialFunction
  24. Function1
  25. AnyRef
  26. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new MinimizerPositions(data: KmerTable, width: Int)

    data

    The minimizer data

    width

    the length of each minimizer

Type Members

  1. class Elements extends AbstractIterator[A] with BufferedIterator[A] with Serializable
    Attributes
    protected
    Definition Classes
    IndexedSeqLike
    Annotations
    @SerialVersionUID()
  2. type Self = IndexedSeq[NTBitArray]
    Attributes
    protected[this]
    Definition Classes
    TraversableLike
  3. class WithFilter extends FilterMonadic[A, Repr]
    Definition Classes
    TraversableLike

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. def ++[B >: NTBitArray, That](that: GenTraversableOnce[B])(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  4. def ++:[B >: NTBitArray, That](that: Traversable[B])(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    TraversableLike
  5. def ++:[B >: NTBitArray, That](that: TraversableOnce[B])(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    TraversableLike
  6. def +:[B >: NTBitArray, That](elem: B)(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    SeqLike → GenSeqLike
  7. def :+[B >: NTBitArray, That](elem: B)(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    SeqLike → GenSeqLike
  8. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  9. def addString(b: StringBuilder): StringBuilder
    Definition Classes
    TraversableOnce
  10. def addString(b: StringBuilder, sep: String): StringBuilder
    Definition Classes
    TraversableOnce
  11. def addString(b: StringBuilder, start: String, sep: String, end: String): StringBuilder
    Definition Classes
    TraversableOnce
  12. def aggregate[B](z: ⇒ B)(seqop: (B, NTBitArray) ⇒ B, combop: (B, B) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  13. def andThen[C](k: (NTBitArray) ⇒ C): PartialFunction[Int, C]
    Definition Classes
    PartialFunction → Function1
  14. def apply(idx: Int): NTBitArray

    Obtain the minimizer for a given position.

    Obtain the minimizer for a given position. Allocates a new object.

    Definition Classes
    MinimizerPositions → SeqLike → GenSeqLike → Function1
  15. def applyOrElse[A1 <: Int, B1 >: NTBitArray](x: A1, default: (A1) ⇒ B1): B1
    Definition Classes
    PartialFunction
  16. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  17. def bitArraySeq: Seq[NTBitArray]

    Get all minimizers as a sequence, keeping position information.

    Get all minimizers as a sequence, keeping position information. Invalid positions will have the MinSplitter.INVALID constant.

  18. def canEqual(that: Any): Boolean
    Definition Classes
    IterableLike → Equals
  19. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @IntrinsicCandidate()
  20. def collect[B, That](pf: PartialFunction[NTBitArray, B])(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  21. def collectFirst[B](pf: PartialFunction[NTBitArray, B]): Option[B]
    Definition Classes
    TraversableOnce
  22. def combinations(n: Int): Iterator[IndexedSeq[NTBitArray]]
    Definition Classes
    SeqLike
  23. def companion: GenericCompanion[IndexedSeq]
    Definition Classes
    IndexedSeq → Seq → GenSeq → Iterable → GenIterable → Traversable → GenTraversable → GenericTraversableTemplate
  24. def compare(pos1: Int, pos2: Int): Int

    Lexicographic comparison of minimizers at two positions

  25. def compose[A](g: (A) ⇒ Int): (A) ⇒ NTBitArray
    Definition Classes
    Function1
    Annotations
    @unspecialized()
  26. def contains[A1 >: NTBitArray](elem: A1): Boolean
    Definition Classes
    SeqLike
  27. def containsSlice[B](that: GenSeq[B]): Boolean
    Definition Classes
    SeqLike
  28. def copyToArray[B >: NTBitArray](xs: Array[B], start: Int, len: Int): Unit
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  29. def copyToArray[B >: NTBitArray](xs: Array[B]): Unit
    Definition Classes
    TraversableOnce → GenTraversableOnce
  30. def copyToArray[B >: NTBitArray](xs: Array[B], start: Int): Unit
    Definition Classes
    TraversableOnce → GenTraversableOnce
  31. def copyToBuffer[B >: NTBitArray](dest: Buffer[B]): Unit
    Definition Classes
    TraversableOnce
  32. def corresponds[B](that: GenSeq[B])(p: (NTBitArray, B) ⇒ Boolean): Boolean
    Definition Classes
    SeqLike → GenSeqLike
  33. def count(p: (NTBitArray) ⇒ Boolean): Int
    Definition Classes
    TraversableOnce → GenTraversableOnce
  34. val data: KmerTable
  35. def diff[B >: NTBitArray](that: GenSeq[B]): IndexedSeq[NTBitArray]
    Definition Classes
    SeqLike → GenSeqLike
  36. def distinct: IndexedSeq[NTBitArray]
    Definition Classes
    SeqLike → GenSeqLike
  37. def drop(n: Int): IndexedSeq[NTBitArray]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  38. def dropRight(n: Int): IndexedSeq[NTBitArray]
    Definition Classes
    IterableLike
  39. def dropWhile(p: (NTBitArray) ⇒ Boolean): IndexedSeq[NTBitArray]
    Definition Classes
    TraversableLike → GenTraversableLike
  40. def endsWith[B](that: GenSeq[B]): Boolean
    Definition Classes
    SeqLike → GenSeqLike
  41. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  42. def equal(pos1: Int, pos2: Int): Boolean
  43. def equals(that: Any): Boolean
    Definition Classes
    GenSeqLike → Equals → Any
  44. def exists(p: (NTBitArray) ⇒ Boolean): Boolean
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  45. def filter(p: (NTBitArray) ⇒ Boolean): IndexedSeq[NTBitArray]
    Definition Classes
    TraversableLike → GenTraversableLike
  46. def filterNot(p: (NTBitArray) ⇒ Boolean): IndexedSeq[NTBitArray]
    Definition Classes
    TraversableLike → GenTraversableLike
  47. def find(p: (NTBitArray) ⇒ Boolean): Option[NTBitArray]
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  48. def flatMap[B, That](f: (NTBitArray) ⇒ GenTraversableOnce[B])(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike → FilterMonadic
  49. def flatten[B](implicit asTraversable: (NTBitArray) ⇒ GenTraversableOnce[B]): IndexedSeq[B]
    Definition Classes
    GenericTraversableTemplate
  50. def fold[A1 >: NTBitArray](z: A1)(op: (A1, A1) ⇒ A1): A1
    Definition Classes
    TraversableOnce → GenTraversableOnce
  51. def foldLeft[B](z: B)(op: (B, NTBitArray) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  52. def foldRight[B](z: B)(op: (NTBitArray, B) ⇒ B): B
    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce
  53. def forall(p: (NTBitArray) ⇒ Boolean): Boolean
    Definition Classes
    IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  54. def foreach[U](f: (NTBitArray) ⇒ U): Unit
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike → TraversableOnce → GenTraversableOnce → FilterMonadic
  55. def genericBuilder[B]: Builder[B, IndexedSeq[B]]
    Definition Classes
    GenericTraversableTemplate
  56. def get(position: Int): Option[NTBitArray]

    Get the minimizer at a position if it is valid, otherwise None

  57. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @IntrinsicCandidate()
  58. def groupBy[K](f: (NTBitArray) ⇒ K): Map[K, IndexedSeq[NTBitArray]]
    Definition Classes
    TraversableLike → GenTraversableLike
  59. def grouped(size: Int): Iterator[IndexedSeq[NTBitArray]]
    Definition Classes
    IterableLike
  60. def hasDefiniteSize: Boolean
    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  61. def hashCode(): Int
    Definition Classes
    IndexedSeqLike → GenSeqLike → Any
  62. def head: NTBitArray
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  63. def headOption: Option[NTBitArray]
    Definition Classes
    TraversableLike → GenTraversableLike
  64. def indexOf[B >: NTBitArray](elem: B, from: Int): Int
    Definition Classes
    GenSeqLike
  65. def indexOf[B >: NTBitArray](elem: B): Int
    Definition Classes
    GenSeqLike
  66. def indexOfSlice[B >: NTBitArray](that: GenSeq[B], from: Int): Int
    Definition Classes
    SeqLike
  67. def indexOfSlice[B >: NTBitArray](that: GenSeq[B]): Int
    Definition Classes
    SeqLike
  68. def indexWhere(p: (NTBitArray) ⇒ Boolean, from: Int): Int
    Definition Classes
    SeqLike → GenSeqLike
  69. def indexWhere(p: (NTBitArray) ⇒ Boolean): Int
    Definition Classes
    GenSeqLike
  70. def indices: Range
    Definition Classes
    SeqLike
  71. def init: IndexedSeq[NTBitArray]
    Definition Classes
    TraversableLike → GenTraversableLike
  72. def inits: Iterator[IndexedSeq[NTBitArray]]
    Definition Classes
    TraversableLike
  73. def intersect[B >: NTBitArray](that: GenSeq[B]): IndexedSeq[NTBitArray]
    Definition Classes
    SeqLike → GenSeqLike
  74. def isAfter(pos1: Int, pos2: Int): Boolean

    Lexicographic comparison of minimizers at two positions

  75. def isBefore(pos1: Int, pos2: Int): Boolean

    Lexicographic comparison of minimizers at two positions

  76. def isDefinedAt(idx: Int): Boolean
    Definition Classes
    GenSeqLike
  77. def isEmpty: Boolean
    Definition Classes
    SeqLike → IterableLike → TraversableLike → TraversableOnce → GenTraversableOnce
  78. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  79. final def isTraversableAgain: Boolean
    Definition Classes
    TraversableLike → GenTraversableLike → GenTraversableOnce
  80. def isValid(position: Int): Boolean
  81. def iterator: Iterator[NTBitArray]
    Definition Classes
    IndexedSeqLike → IterableLike → GenIterableLike
  82. def last: NTBitArray
    Definition Classes
    TraversableLike → GenTraversableLike
  83. def lastIndexOf[B >: NTBitArray](elem: B, end: Int): Int
    Definition Classes
    GenSeqLike
  84. def lastIndexOf[B >: NTBitArray](elem: B): Int
    Definition Classes
    GenSeqLike
  85. def lastIndexOfSlice[B >: NTBitArray](that: GenSeq[B], end: Int): Int
    Definition Classes
    SeqLike
  86. def lastIndexOfSlice[B >: NTBitArray](that: GenSeq[B]): Int
    Definition Classes
    SeqLike
  87. def lastIndexWhere(p: (NTBitArray) ⇒ Boolean, end: Int): Int
    Definition Classes
    SeqLike → GenSeqLike
  88. def lastIndexWhere(p: (NTBitArray) ⇒ Boolean): Int
    Definition Classes
    GenSeqLike
  89. def lastOption: Option[NTBitArray]
    Definition Classes
    TraversableLike → GenTraversableLike
  90. def length: Int
    Definition Classes
    MinimizerPositions → SeqLike → GenSeqLike
  91. def lengthCompare(len: Int): Int
    Definition Classes
    SeqLike
  92. def lift: (Int) ⇒ Option[NTBitArray]
    Definition Classes
    PartialFunction
  93. def map[B, That](f: (NTBitArray) ⇒ B)(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike → FilterMonadic
  94. def max[B >: NTBitArray](implicit cmp: Ordering[B]): NTBitArray
    Definition Classes
    TraversableOnce → GenTraversableOnce
  95. def maxBy[B](f: (NTBitArray) ⇒ B)(implicit cmp: Ordering[B]): NTBitArray
    Definition Classes
    TraversableOnce → GenTraversableOnce
  96. def min[B >: NTBitArray](implicit cmp: Ordering[B]): NTBitArray
    Definition Classes
    TraversableOnce → GenTraversableOnce
  97. def minBy[B](f: (NTBitArray) ⇒ B)(implicit cmp: Ordering[B]): NTBitArray
    Definition Classes
    TraversableOnce → GenTraversableOnce
  98. def mkString: String
    Definition Classes
    TraversableOnce → GenTraversableOnce
  99. def mkString(sep: String): String
    Definition Classes
    TraversableOnce → GenTraversableOnce
  100. def mkString(start: String, sep: String, end: String): String
    Definition Classes
    TraversableOnce → GenTraversableOnce
  101. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  102. def newBuilder: Builder[NTBitArray, IndexedSeq[NTBitArray]]
    Attributes
    protected[this]
    Definition Classes
    GenericTraversableTemplate → HasNewBuilder
  103. def nonEmpty: Boolean
    Definition Classes
    TraversableOnce → GenTraversableOnce
  104. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @IntrinsicCandidate()
  105. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @IntrinsicCandidate()
  106. def orElse[A1 <: Int, B1 >: NTBitArray](that: PartialFunction[A1, B1]): PartialFunction[A1, B1]
    Definition Classes
    PartialFunction
  107. def padTo[B >: NTBitArray, That](len: Int, elem: B)(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    SeqLike → GenSeqLike
  108. def par: ParSeq[NTBitArray]
    Definition Classes
    Parallelizable
  109. def parCombiner: Combiner[NTBitArray, ParSeq[NTBitArray]]
    Attributes
    protected[this]
    Definition Classes
    SeqLike → TraversableLike → Parallelizable
  110. def partition(p: (NTBitArray) ⇒ Boolean): (IndexedSeq[NTBitArray], IndexedSeq[NTBitArray])
    Definition Classes
    TraversableLike → GenTraversableLike
  111. def patch[B >: NTBitArray, That](from: Int, patch: GenSeq[B], replaced: Int)(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    SeqLike → GenSeqLike
  112. def permutations: Iterator[IndexedSeq[NTBitArray]]
    Definition Classes
    SeqLike
  113. def prefixLength(p: (NTBitArray) ⇒ Boolean): Int
    Definition Classes
    GenSeqLike
  114. def product[B >: NTBitArray](implicit num: Numeric[B]): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  115. def reduce[A1 >: NTBitArray](op: (A1, A1) ⇒ A1): A1
    Definition Classes
    TraversableOnce → GenTraversableOnce
  116. def reduceLeft[B >: NTBitArray](op: (B, NTBitArray) ⇒ B): B
    Definition Classes
    TraversableOnce
  117. def reduceLeftOption[B >: NTBitArray](op: (B, NTBitArray) ⇒ B): Option[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  118. def reduceOption[A1 >: NTBitArray](op: (A1, A1) ⇒ A1): Option[A1]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  119. def reduceRight[B >: NTBitArray](op: (NTBitArray, B) ⇒ B): B
    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce
  120. def reduceRightOption[B >: NTBitArray](op: (NTBitArray, B) ⇒ B): Option[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  121. def repr: IndexedSeq[NTBitArray]
    Definition Classes
    TraversableLike → GenTraversableLike
  122. def reverse: IndexedSeq[NTBitArray]
    Definition Classes
    SeqLike → GenSeqLike
  123. def reverseIterator: Iterator[NTBitArray]
    Definition Classes
    SeqLike
  124. def reverseMap[B, That](f: (NTBitArray) ⇒ B)(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    SeqLike → GenSeqLike
  125. def reversed: List[NTBitArray]
    Attributes
    protected[this]
    Definition Classes
    TraversableOnce
  126. def runWith[U](action: (NTBitArray) ⇒ U): (Int) ⇒ Boolean
    Definition Classes
    PartialFunction
  127. def sameElements[B >: NTBitArray](that: GenIterable[B]): Boolean
    Definition Classes
    IterableLike → GenIterableLike
  128. def scan[B >: NTBitArray, That](z: B)(op: (B, B) ⇒ B)(implicit cbf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  129. def scanLeft[B, That](z: B)(op: (B, NTBitArray) ⇒ B)(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  130. def scanRight[B, That](z: B)(op: (NTBitArray, B) ⇒ B)(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) The behavior of scanRight has changed. The previous behavior can be reproduced with scanRight.reverse.

  131. def segmentLength(p: (NTBitArray) ⇒ Boolean, from: Int): Int
    Definition Classes
    SeqLike → GenSeqLike
  132. def seq: IndexedSeq[NTBitArray]
    Definition Classes
    IndexedSeq → IndexedSeqLike → Seq → GenSeq → GenSeqLike → Iterable → GenIterable → Traversable → GenTraversable → Parallelizable → TraversableOnce → GenTraversableOnce
  133. def setValid(position: Int, flag: Long): Unit
  134. def size: Int
    Definition Classes
    SeqLike → GenTraversableLike → TraversableOnce → GenTraversableOnce
  135. def sizeHintIfCheap: Int
    Attributes
    protected[collection]
    Definition Classes
    IndexedSeqLike → GenTraversableOnce
  136. def slice(from: Int, until: Int): IndexedSeq[NTBitArray]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  137. def sliding(size: Int, step: Int): Iterator[IndexedSeq[NTBitArray]]
    Definition Classes
    IterableLike
  138. def sliding(size: Int): Iterator[IndexedSeq[NTBitArray]]
    Definition Classes
    IterableLike
  139. def sortBy[B](f: (NTBitArray) ⇒ B)(implicit ord: Ordering[B]): IndexedSeq[NTBitArray]
    Definition Classes
    SeqLike
  140. def sortWith(lt: (NTBitArray, NTBitArray) ⇒ Boolean): IndexedSeq[NTBitArray]
    Definition Classes
    SeqLike
  141. def sorted[B >: NTBitArray](implicit ord: Ordering[B]): IndexedSeq[NTBitArray]
    Definition Classes
    SeqLike
  142. def span(p: (NTBitArray) ⇒ Boolean): (IndexedSeq[NTBitArray], IndexedSeq[NTBitArray])
    Definition Classes
    TraversableLike → GenTraversableLike
  143. def splitAt(n: Int): (IndexedSeq[NTBitArray], IndexedSeq[NTBitArray])
    Definition Classes
    TraversableLike → GenTraversableLike
  144. def startsWith[B](that: GenSeq[B], offset: Int): Boolean
    Definition Classes
    SeqLike → GenSeqLike
  145. def startsWith[B](that: GenSeq[B]): Boolean
    Definition Classes
    GenSeqLike
  146. def stringPrefix: String
    Definition Classes
    TraversableLike → GenTraversableLike
  147. def sum[B >: NTBitArray](implicit num: Numeric[B]): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  148. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  149. def tail: IndexedSeq[NTBitArray]
    Definition Classes
    TraversableLike → GenTraversableLike
  150. def tails: Iterator[IndexedSeq[NTBitArray]]
    Definition Classes
    TraversableLike
  151. def take(n: Int): IndexedSeq[NTBitArray]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  152. def takeRight(n: Int): IndexedSeq[NTBitArray]
    Definition Classes
    IterableLike
  153. def takeWhile(p: (NTBitArray) ⇒ Boolean): IndexedSeq[NTBitArray]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  154. def thisCollection: IndexedSeq[NTBitArray]
    Attributes
    protected[this]
    Definition Classes
    IndexedSeqLike → SeqLike → IterableLike → TraversableLike
  155. def to[Col[_]](implicit cbf: CanBuildFrom[Nothing, NTBitArray, Col[NTBitArray]]): Col[NTBitArray]
    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  156. def toArray[B >: NTBitArray](implicit arg0: ClassTag[B]): Array[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  157. def toBuffer[A1 >: NTBitArray]: Buffer[A1]
    Definition Classes
    IndexedSeqLike → TraversableOnce → GenTraversableOnce
  158. def toCollection(repr: IndexedSeq[NTBitArray]): IndexedSeq[NTBitArray]
    Attributes
    protected[this]
    Definition Classes
    IndexedSeqLike → SeqLike → IterableLike → TraversableLike
  159. def toIndexedSeq: IndexedSeq[NTBitArray]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  160. def toIterable: Iterable[NTBitArray]
    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce
  161. def toIterator: Iterator[NTBitArray]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableOnce
    Annotations
    @deprecatedOverriding( ... , "2.11.0" )
  162. def toList: List[NTBitArray]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  163. def toMap[T, U](implicit ev: <:<[NTBitArray, (T, U)]): Map[T, U]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  164. def toSeq: Seq[NTBitArray]
    Definition Classes
    SeqLike → GenSeqLike → TraversableOnce → GenTraversableOnce
  165. def toSet[B >: NTBitArray]: Set[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  166. def toStream: Stream[NTBitArray]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableOnce
  167. def toString(): String
    Definition Classes
    SeqLike → TraversableLike → Any
  168. def toTraversable: Traversable[NTBitArray]
    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
    Annotations
    @deprecatedOverriding( ... , "2.11.0" )
  169. def toVector: Vector[NTBitArray]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  170. def transpose[B](implicit asTraversable: (NTBitArray) ⇒ GenTraversableOnce[B]): IndexedSeq[IndexedSeq[B]]
    Definition Classes
    GenericTraversableTemplate
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) transpose throws an IllegalArgumentException if collections are not uniformly sized.

  171. def union[B >: NTBitArray, That](that: GenSeq[B])(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    SeqLike → GenSeqLike
  172. def unzip[A1, A2](implicit asPair: (NTBitArray) ⇒ (A1, A2)): (IndexedSeq[A1], IndexedSeq[A2])
    Definition Classes
    GenericTraversableTemplate
  173. def unzip3[A1, A2, A3](implicit asTriple: (NTBitArray) ⇒ (A1, A2, A3)): (IndexedSeq[A1], IndexedSeq[A2], IndexedSeq[A3])
    Definition Classes
    GenericTraversableTemplate
  174. def updated[B >: NTBitArray, That](index: Int, elem: B)(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], B, That]): That
    Definition Classes
    SeqLike → GenSeqLike
  175. def validBitArrayIterator: Iterator[NTBitArray]

    Get all valid minimizers as an iterator (loses position information).

    Get all valid minimizers as an iterator (loses position information). Expensive for long sequences.

  176. def view(from: Int, until: Int): SeqView[NTBitArray, IndexedSeq[NTBitArray]]
    Definition Classes
    SeqLike → IterableLike → TraversableLike
  177. def view: SeqView[NTBitArray, IndexedSeq[NTBitArray]]
    Definition Classes
    SeqLike → IterableLike → TraversableLike
  178. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  179. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  180. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  181. def withFilter(p: (NTBitArray) ⇒ Boolean): FilterMonadic[NTBitArray, IndexedSeq[NTBitArray]]
    Definition Classes
    TraversableLike → FilterMonadic
  182. def zip[A1 >: NTBitArray, B, That](that: GenIterable[B])(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], (A1, B), That]): That
    Definition Classes
    IterableLike → GenIterableLike
  183. def zipAll[B, A1 >: NTBitArray, That](that: GenIterable[B], thisElem: A1, thatElem: B)(implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], (A1, B), That]): That
    Definition Classes
    IterableLike → GenIterableLike
  184. def zipWithIndex[A1 >: NTBitArray, That](implicit bf: CanBuildFrom[IndexedSeq[NTBitArray], (A1, Int), That]): That
    Definition Classes
    IterableLike → GenIterableLike

Deprecated Value Members

  1. def /:[B](z: B)(op: (B, NTBitArray) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
    Annotations
    @deprecated
    Deprecated

    (Since version 2.12.10) Use foldLeft instead of /:

  2. def :\[B](z: B)(op: (NTBitArray, B) ⇒ B): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
    Annotations
    @deprecated
    Deprecated

    (Since version 2.12.10) Use foldRight instead of :\

  3. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from IndexedSeq[NTBitArray]

Inherited from IndexedSeqLike[NTBitArray, IndexedSeq[NTBitArray]]

Inherited from Seq[NTBitArray]

Inherited from SeqLike[NTBitArray, IndexedSeq[NTBitArray]]

Inherited from GenSeq[NTBitArray]

Inherited from GenSeqLike[NTBitArray, IndexedSeq[NTBitArray]]

Inherited from Iterable[NTBitArray]

Inherited from IterableLike[NTBitArray, IndexedSeq[NTBitArray]]

Inherited from Equals

Inherited from GenIterable[NTBitArray]

Inherited from GenIterableLike[NTBitArray, IndexedSeq[NTBitArray]]

Inherited from Traversable[NTBitArray]

Inherited from GenTraversable[NTBitArray]

Inherited from GenericTraversableTemplate[NTBitArray, IndexedSeq]

Inherited from TraversableLike[NTBitArray, IndexedSeq[NTBitArray]]

Inherited from GenTraversableLike[NTBitArray, IndexedSeq[NTBitArray]]

Inherited from Parallelizable[NTBitArray, ParSeq[NTBitArray]]

Inherited from TraversableOnce[NTBitArray]

Inherited from GenTraversableOnce[NTBitArray]

Inherited from FilterMonadic[NTBitArray, IndexedSeq[NTBitArray]]

Inherited from HasNewBuilder[NTBitArray, IndexedSeq[com.jnpersson.kmers.util.NTBitArray] @scala.annotation.unchecked.uncheckedVariance]

Inherited from PartialFunction[Int, NTBitArray]

Inherited from (Int) ⇒ NTBitArray

Inherited from AnyRef

Inherited from Any

Ungrouped