final case class InputFragment(header: SeqTitle, location: SeqLocation, nucleotides: NTSeq, nucleotides2: Option[NTSeq]) extends Product with Serializable
A sequence fragment with a controlled maximum size. Does not contain whitespace.
- header
Title/header of the sequence
- location
1-based location in the source sequence
- nucleotides
Nucleotides in the source sequence
- nucleotides2
Nucleotides for the second half in a pair, for paired end reads
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InputFragment(header: SeqTitle, location: SeqLocation, nucleotides: NTSeq, nucleotides2: Option[NTSeq])
- header
Title/header of the sequence
- location
1-based location in the source sequence
- nucleotides
Nucleotides in the source sequence
- nucleotides2
Nucleotides for the second half in a pair, for paired end reads
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- val header: SeqTitle
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- val location: SeqLocation
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- val nucleotides: NTSeq
- val nucleotides2: Option[NTSeq]
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