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object MinTable extends Serializable

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  1. MinTable
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  1. final def !=(arg0: Any): Boolean
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  2. final def ##(): Int
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  3. final def ==(arg0: Any): Boolean
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  4. final def asInstanceOf[T0]: T0
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  5. def clone(): AnyRef
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    @throws( ... ) @native() @IntrinsicCandidate()
  6. final def eq(arg0: AnyRef): Boolean
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  7. def equals(arg0: Any): Boolean
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  8. def filteredOrdering(template: MinTable, validMers: Iterable[Int]): MinTable

    Create a new motif table from a template, preserving the relative ordering, but filtering by the supplied valid set

    Create a new motif table from a template, preserving the relative ordering, but filtering by the supplied valid set

    template

    The template that should be filtered

    validMers

    Motifs to be included. Others will be excluded.

    returns

    A MinTable with filtered minimizer set

  9. final def getClass(): Class[_]
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    @native() @IntrinsicCandidate()
  10. def hashCode(): Int
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  11. final def isInstanceOf[T0]: Boolean
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  12. final def ne(arg0: AnyRef): Boolean
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  13. final def notify(): Unit
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    @native() @IntrinsicCandidate()
  14. final def notifyAll(): Unit
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    @native() @IntrinsicCandidate()
  15. def ofLength(length: Int): MinTable

    Generate a motif table with all motifs of a certain length, in lexicographic order.

  16. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
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  17. def toString(): String
    Definition Classes
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  18. def using(mers: Seq[NTBitArray]): MinTable

    Create a motif table using the supplied minimizers in the given order.

    Create a motif table using the supplied minimizers in the given order.

    mers

    Motifs in the desired priority order

    returns

    The new motif table

  19. def usingRaw(mers: Array[Int], width: Int): MinTable
  20. final def wait(arg0: Long, arg1: Int): Unit
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  21. final def wait(arg0: Long): Unit
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  22. final def wait(): Unit
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    @throws( ... )
  23. def withAll(width: Int): MinTable

Deprecated Value Members

  1. def finalize(): Unit
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    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from Serializable

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