final case class SplitSegment(hash: BucketId, sequence: SeqID, location: SeqLocation, nucleotides: ZeroNTBitArray) extends Product with Serializable
A hashed segment (i.e. a superkmer, where every k-mer shares the same minimizer) with minimizer, sequence ID, and 1-based sequence location
- hash
hash (minimizer)
- sequence
Sequence ID/header
- location
Sequence location (1-based) if available
- nucleotides
Encoded nucleotides of this segment
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new
SplitSegment(hash: BucketId, sequence: SeqID, location: SeqLocation, nucleotides: ZeroNTBitArray)
- hash
hash (minimizer)
- sequence
Sequence ID/header
- location
Sequence location (1-based) if available
- nucleotides
Encoded nucleotides of this segment
Value Members
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def
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def
##(): Int
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eq(arg0: AnyRef): Boolean
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finalize(): Unit
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def
getClass(): Class[_]
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- val hash: BucketId
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def
humanReadable(splitter: AnyMinSplitter): (String, SeqID, SeqLocation, NTSeq)
Obtain a human-readable (decoded) version of this SplitSegment
Obtain a human-readable (decoded) version of this SplitSegment
- splitter
The splitter object that generated this segment
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final
def
isInstanceOf[T0]: Boolean
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- val location: SeqLocation
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final
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ne(arg0: AnyRef): Boolean
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notify(): Unit
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notifyAll(): Unit
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- val nucleotides: ZeroNTBitArray
- val sequence: SeqID
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def
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def
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