Packages

final case class SplitSegment(hash: BucketId, sequence: SeqID, location: SeqLocation, nucleotides: ZeroNTBitArray) extends Product with Serializable

A hashed segment (i.e. a superkmer, where every k-mer shares the same minimizer) with minimizer, sequence ID, and 1-based sequence location

hash

hash (minimizer)

sequence

Sequence ID/header

location

Sequence location (1-based) if available

nucleotides

Encoded nucleotides of this segment

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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  1. SplitSegment
  2. Serializable
  3. Serializable
  4. Product
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Instance Constructors

  1. new SplitSegment(hash: BucketId, sequence: SeqID, location: SeqLocation, nucleotides: ZeroNTBitArray)

    hash

    hash (minimizer)

    sequence

    Sequence ID/header

    location

    Sequence location (1-based) if available

    nucleotides

    Encoded nucleotides of this segment

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  6. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  7. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  8. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  9. val hash: BucketId
  10. def humanReadable(splitter: AnyMinSplitter): (String, SeqID, SeqLocation, NTSeq)

    Obtain a human-readable (decoded) version of this SplitSegment

    Obtain a human-readable (decoded) version of this SplitSegment

    splitter

    The splitter object that generated this segment

  11. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  12. val location: SeqLocation
  13. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  14. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  15. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  16. val nucleotides: ZeroNTBitArray
  17. val sequence: SeqID
  18. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  19. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  20. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  21. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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