Packages

c

com.jnpersson.discount.hash

InputFragment

final case class InputFragment(header: SeqTitle, location: SeqLocation, nucleotides: NTSeq) extends Product with Serializable

A sequence fragment with a controlled maximum size. Does not contain whitespace.

header

Title/header of the sequence

location

1-based location in the source sequence

nucleotides

Nucleotides in the source sequence

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. InputFragment
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
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  2. All

Instance Constructors

  1. new InputFragment(header: SeqTitle, location: SeqLocation, nucleotides: NTSeq)

    header

    Title/header of the sequence

    location

    1-based location in the source sequence

    nucleotides

    Nucleotides in the source sequence

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  6. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  7. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  8. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  9. val header: SeqTitle
  10. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  11. val location: SeqLocation
  12. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  13. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  14. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  15. val nucleotides: NTSeq
  16. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  17. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  18. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  19. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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