Value Members

1.  final def !=(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

2.  final def ##(): Int

   Definition Classes

   AnyRef → Any

3.  final def ==(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

4.  final def asInstanceOf[T0]: T0

   Definition Classes

   Any

5.  val canonical: Boolean
6.  def clone(): AnyRef

   Attributes

   protected[lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... ) @native()

7.  final def eq(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

8.  def finalize(): Unit

   Attributes

   protected[lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( classOf[java.lang.Throwable] )

9.  final def getClass(): Class[_]

   Definition Classes

   AnyRef → Any

   Annotations

   @native()

10.  def humanReadable(priority: BucketId): NTSeq

    Human-readable nucleotide sequence corresponding to a given minimizer

    Human-readable nucleotide sequence corresponding to a given minimizer

    Definition Classes

    MinimizerPriorities

11.  final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

12.  def motifForPriority(priority: BucketId): Long

    Get the minimizer for a given priority.

    Get the minimizer for a given priority. Inverse of the function above.

    Definition Classes

    RandomXOR → MinimizerPriorities

13.  final def ne(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

14.  final def notify(): Unit

    Definition Classes

    AnyRef

    Annotations

    @native()

15.  final def notifyAll(): Unit

    Definition Classes

    AnyRef

    Annotations

    @native()

16.  def numLargeBuckets: Long

    Number of buckets (minimizers) expected to be very large (frequent), if any

    Number of buckets (minimizers) expected to be very large (frequent), if any

    Definition Classes

    MinimizerPriorities

17.  val numMinimizers: Long

    Total number of distinct minimizers in this ordering

    Total number of distinct minimizers in this ordering

    Definition Classes

    RandomXOR → MinimizerPriorities

18.  def priorityLookup(motif: Long): BucketId

    Get the priority of the given minimizer.

    Get the priority of the given minimizer. If not every m-mer is a minimizer, then -1 indicates an invalid minimizer.

    Definition Classes

    RandomXOR → MinimizerPriorities

19.  final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

    AnyRef

20.  final def wait(): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

21.  final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

22.  final def wait(arg0: Long): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... ) @native()

23.  val width: Int

    Minimizer width (m)

    Minimizer width (m)

    Definition Classes

    RandomXOR → MinimizerPriorities

24.  val xorMask: Long