Packages

t

com.jnpersson.discount.hash

MinimizerPriorities

trait MinimizerPriorities extends Serializable

Defines a reversible mapping between encoded minimizers and their priorities.

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MinTable, RandomXOR
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Abstract Value Members

  1. abstract def motifForPriority(priority: BucketId): Long

    Get the minimizer for a given priority.

    Get the minimizer for a given priority. Inverse of the function above.

  2. abstract def numMinimizers: Long

    Total number of distinct minimizers in this ordering

  3. abstract def priorityLookup(motif: Long): BucketId

    Get the priority of the given minimizer.

    Get the priority of the given minimizer. If not every m-mer is a minimizer, then -1 indicates an invalid minimizer.

  4. abstract def width: Int

    Minimizer width (m)

Concrete Value Members

  1. final def !=(arg0: Any): Boolean
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  2. final def ##(): Int
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  10. def hashCode(): Int
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  11. def humanReadable(priority: BucketId): NTSeq

    Human-readable nucleotide sequence corresponding to a given minimizer

  12. final def isInstanceOf[T0]: Boolean
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  13. final def ne(arg0: AnyRef): Boolean
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  14. final def notify(): Unit
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  15. final def notifyAll(): Unit
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  16. def numLargeBuckets: Long

    Number of buckets (minimizers) expected to be very large (frequent), if any

  17. final def synchronized[T0](arg0: ⇒ T0): T0
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  18. def toString(): String
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