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1.  final def !=(arg0: Any): Boolean

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2.  final def ##(): Int

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3.  final def ==(arg0: Any): Boolean

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4.  final def asInstanceOf[T0]: T0

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5.  def clone(): AnyRef

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6.  final def eq(arg0: AnyRef): Boolean

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7.  def equals(arg0: Any): Boolean

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8.  def finalize(): Unit

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9.  def fromReads(scanner: ShiftScanner, inputs: Iterator[NTSeq]): SampledFrequencies

   Constructs a SampledFrequencies object by in-memory counting all motifs in the input sequences, using the supplied ShiftScanner.

   Constructs a SampledFrequencies object by in-memory counting all motifs in the input sequences, using the supplied ShiftScanner. Intended for use only when Spark is not available.

   scanner

   Scanner to use for parsing valid minimizers

   inputs

   Input data to scan

   returns

   Frequencies of all valid motifs

10.  final def getClass(): Class[_]

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11.  def hashCode(): Int

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12.  final def isInstanceOf[T0]: Boolean

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13.  final def ne(arg0: AnyRef): Boolean

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14.  final def notify(): Unit

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15.  final def notifyAll(): Unit

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16.  final def synchronized[T0](arg0: ⇒ T0): T0

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17.  def toString(): String

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18.  def toTableByFrequency(counts: Array[(NTSeq, Long)]): MinTable

    Construct a MiniTable from frequency counted motifs

    Construct a MiniTable from frequency counted motifs

    counts

    Motifs and the number of times they are estimated to occur in the data

19.  final def wait(): Unit

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20.  final def wait(arg0: Long, arg1: Int): Unit

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21.  final def wait(arg0: Long): Unit

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