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com.jnpersson.kmers

KmerKeyedIndex

trait KmerKeyedIndex extends AnyRef

Methods to support an index of key-value pairs with a fixed number of id columns (Longs) that contain an encoded k-mer.

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Abstract Value Members

  1. abstract def idLongs: Int
  2. abstract val spark: SparkSession

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  1. final def !=(arg0: Any): Boolean
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  2. final def ##(): Int
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  3. final def ==(arg0: Any): Boolean
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  5. def clone(): AnyRef
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  6. final def eq(arg0: AnyRef): Boolean
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  7. def equals(arg0: Any): Boolean
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  8. final def getClass(): Class[_]
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  9. def hashCode(): Int
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  10. def idColumnNames: Seq[String]

    Names of the key columns

  11. def idColumns: Seq[Column]

    All key columns

  12. def idColumnsFromMinimizer: Seq[Column]

    Unpack the minimizer array column to multiple columns

  13. def idColumnsString: String

    All key columns as a single string

  14. def idColumnsTypes: String
  15. final def isInstanceOf[T0]: Boolean
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  16. def minimizerColumnFromIdColumns: Column

    Pack the minimizer columns into a single array

  17. final def ne(arg0: AnyRef): Boolean
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  18. final def notify(): Unit
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  19. final def notifyAll(): Unit
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  20. def numIdColumns: Int
  21. final def synchronized[T0](arg0: ⇒ T0): T0
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  22. def toString(): String
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  23. final def wait(arg0: Long, arg1: Int): Unit
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  24. final def wait(arg0: Long): Unit
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  25. final def wait(): Unit
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  1. def finalize(): Unit
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