Packages

object Output

Output format helper methods

Linear Supertypes
AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. Output
  2. AnyRef
  3. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  6. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  7. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  8. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  9. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  10. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  11. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  12. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  13. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  14. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  15. def showStats(stats: Dataset[BucketStats], fileOutput: Option[String] = None)(implicit spark: SparkSession): Unit

    Print overview statistics for a collection of BucketStats objects.

    Print overview statistics for a collection of BucketStats objects.

    stats

    Statistics to aggregate

    fileOutput

    Location to also write output file to (optional, prefix name)

  16. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  17. def toString(): String
    Definition Classes
    AnyRef → Any
  18. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  19. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  20. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  21. def writeFastaCounts(allKmers: Dataset[(NTSeq, Abundance)], writeLocation: String)(implicit spark: SparkSession): Unit

    Write k-mers with counts as FASTA files.

    Write k-mers with counts as FASTA files. Each k-mer becomes a separate sequence. The counts are output as sequence ID headers.

    allKmers

    data to write

    writeLocation

    location to write (prefix name, a suffix will be appended)

  22. def writeTSV[A](allKmers: Dataset[A], writeLocation: String): Unit

    Write a data table as TSV to the filesystem.

    Write a data table as TSV to the filesystem.

    allKmers

    data to write

    writeLocation

    location to write (prefix name, a suffix will be appended)

Inherited from AnyRef

Inherited from Any

Ungrouped