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object Sampling

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  1. final def !=(arg0: Any): Boolean
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  2. final def ##(): Int
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  8. def finalize(): Unit
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  9. def findBestMinimizerFile(minimizerDir: String, k: Int, m: Int)(implicit spark: SparkSession): String

    Given a directory with files such as minimizers_28_10.txt, minimizers_55_9.txt...

    Given a directory with files such as minimizers_28_10.txt, minimizers_55_9.txt... (minimizers_${k}_${m}.txt), find the most appropriate universal k-mer hitting set (for example, generated by PASHA) by searching all possible filenames. In general, it's possible to use a universal k-mer hitting set generated for a smaller k (with some loss of performance), but m must be the same. See https://github.com/ekimb/pasha.

    minimizerDir

    Directory to scan

    k

    k-mer width

    m

    minimizer length

  10. final def getClass(): Class[_]
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  16. final def synchronized[T0](arg0: ⇒ T0): T0
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