final case class BucketStats(id: String, superKmers: Long, totalAbundance: Abundance, distinctKmers: Long, uniqueKmers: Long, maxAbundance: Abundance) extends Product with Serializable
Statistics for a single bin/bucket.
- id
Minimizer/bucket ID (human-readable)
- superKmers
Total number of superkmers
- totalAbundance
Total number of k-mers counted
- distinctKmers
Total number of distinct k-mers
- uniqueKmers
Total number of k-mers with abundance == 1
- maxAbundance
Greatest abundance seen for a single k-mer
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new
BucketStats(id: String, superKmers: Long, totalAbundance: Abundance, distinctKmers: Long, uniqueKmers: Long, maxAbundance: Abundance)
- id
Minimizer/bucket ID (human-readable)
- superKmers
Total number of superkmers
- totalAbundance
Total number of k-mers counted
- distinctKmers
Total number of distinct k-mers
- uniqueKmers
Total number of k-mers with abundance == 1
- maxAbundance
Greatest abundance seen for a single k-mer
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def
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- val distinctKmers: Long
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final
def
eq(arg0: AnyRef): Boolean
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def
equalCounts(other: BucketStats): Boolean
Test whether k-mer counts are equivalent, ignoring minimizer ordering effects (bucket ID and superkmer count)
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final
def
getClass(): Class[_]
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- val id: String
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final
def
isInstanceOf[T0]: Boolean
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- val maxAbundance: Abundance
- def merge(other: BucketStats): BucketStats
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- val superKmers: Long
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final
def
synchronized[T0](arg0: ⇒ T0): T0
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- val totalAbundance: Abundance
- val uniqueKmers: Long
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def
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