case class IndexParams(bcSplit: Broadcast[AnyMinSplitter], buckets: Int, location: String) extends Product with Serializable
Parameters for a k-mer index.
- bcSplit
The broadcast splitter (minimizer scheme/ordering)
- buckets
The number of buckets (Spark partitions) to partition the index into - NB, not the same as minimizer bins
- location
The location (directory/prefix name) where the index is stored
Linear Supertypes
Ordering
- Alphabetic
- By Inheritance
Inherited
- IndexParams
- Serializable
- Serializable
- Product
- Equals
- AnyRef
- Any
- Hide All
- Show All
Visibility
- Public
- All
Instance Constructors
-
new
IndexParams(bcSplit: Broadcast[AnyMinSplitter], buckets: Int, location: String)
- bcSplit
The broadcast splitter (minimizer scheme/ordering)
- buckets
The number of buckets (Spark partitions) to partition the index into - NB, not the same as minimizer bins
- location
The location (directory/prefix name) where the index is stored
Value Members
-
final
def
!=(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
-
final
def
##(): Int
- Definition Classes
- AnyRef → Any
-
final
def
==(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
-
final
def
asInstanceOf[T0]: T0
- Definition Classes
- Any
- val bcSplit: Broadcast[AnyMinSplitter]
- val buckets: Int
-
def
clone(): AnyRef
- Attributes
- protected[lang]
- Definition Classes
- AnyRef
- Annotations
- @throws( ... ) @native()
- def compatibilityCheck(other: IndexParams, strict: Boolean): Unit
-
final
def
eq(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
-
def
finalize(): Unit
- Attributes
- protected[lang]
- Definition Classes
- AnyRef
- Annotations
- @throws( classOf[java.lang.Throwable] )
-
final
def
getClass(): Class[_]
- Definition Classes
- AnyRef → Any
- Annotations
- @native()
-
final
def
isInstanceOf[T0]: Boolean
- Definition Classes
- Any
- def k: Int
- val location: String
- def m: Int
-
final
def
ne(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
-
final
def
notify(): Unit
- Definition Classes
- AnyRef
- Annotations
- @native()
-
final
def
notifyAll(): Unit
- Definition Classes
- AnyRef
- Annotations
- @native()
- def properties: Properties
- def splitter: AnyMinSplitter
-
final
def
synchronized[T0](arg0: ⇒ T0): T0
- Definition Classes
- AnyRef
-
def
toString(): String
- Definition Classes
- IndexParams → AnyRef → Any
-
final
def
wait(): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
-
final
def
wait(arg0: Long, arg1: Int): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
-
final
def
wait(arg0: Long): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... ) @native()
-
def
write(location: String, comment: String)(implicit spark: SparkSession): Unit
Write index parameters to a given location