Value Members

1.  final def !=(arg0: Any): Boolean

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2.  final def ##(): Int

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3.  final def ==(arg0: Any): Boolean

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4.  final def asInstanceOf[T0]: T0

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5.  def clone(): AnyRef

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6.  def countingCompacted(id: BucketId, supermers: Array[ZeroNTBitArray], abundances: Array[Abundance], k: Int, filterOrientation: Boolean): ReducibleBucket

   Construct a ReducibleBucket with a counting (addition) reducer and the given abundances.

7.  def countingCompacted(id: BucketId, supermers: Array[ZeroNTBitArray], k: Int): ReducibleBucket

   Construct a ReducibleBucket with a counting (addition) reducer.

   Construct a ReducibleBucket with a counting (addition) reducer. Compacting will be performed.

8.  final def eq(arg0: AnyRef): Boolean

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9.  def equals(arg0: Any): Boolean

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10.  def finalize(): Unit

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11.  final def getClass(): Class[_]

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12.  def hashCode(): Int

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13.  def intersectCompact(b1: ReducibleBucket, b2: ReducibleBucket, k: Int, rule: Rule): ReducibleBucket

    Intersection of two buckets.

    Intersection of two buckets. The buckets must already have been compacted prior to calling this method (each k-mer must occur only once per bucket with tag > 0)

    b1

    Bucket 1

    b2

    Bucket 2

    k

    Length of k-mers

    rule

    reduction rule

14.  final def isInstanceOf[T0]: Boolean

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15.  final def ne(arg0: AnyRef): Boolean

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16.  final def notify(): Unit

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17.  final def notifyAll(): Unit

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18.  final def synchronized[T0](arg0: ⇒ T0): T0

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19.  def toString(): String

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20.  def unionCompact(b1: Option[ReducibleBucket], b2: Option[ReducibleBucket], k: Int, rule: Rule): ReducibleBucket

    Union of two buckets.

    Union of two buckets.

    b1

    bucket 1

    b2

    bucket 2

    k

    length of k-mers

    rule

    reduction rule

21.  final def wait(): Unit

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22.  final def wait(arg0: Long, arg1: Int): Unit

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23.  final def wait(arg0: Long): Unit

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