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object ReducibleBucket extends Serializable

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  1. ReducibleBucket
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Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
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  3. final def ==(arg0: Any): Boolean
    Definition Classes
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  4. final def asInstanceOf[T0]: T0
    Definition Classes
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  5. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
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    Annotations
    @throws( ... ) @native() @IntrinsicCandidate()
  6. def countingCompacted(id: BucketId, supermers: Array[NTBitArray], abundances: Array[Abundance], k: Int, orientation: Orientation): ReducibleBucket

    Construct a ReducibleBucket with a counting (addition) reducer and the given abundances.

  7. def countingCompacted(id: BucketId, supermers: Array[NTBitArray], k: Int): ReducibleBucket

    Construct a ReducibleBucket with a counting (addition) reducer.

    Construct a ReducibleBucket with a counting (addition) reducer. Compacting will be performed.

  8. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  9. def equals(arg0: Any): Boolean
    Definition Classes
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  10. final def getClass(): Class[_]
    Definition Classes
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    Annotations
    @native() @IntrinsicCandidate()
  11. def hashCode(): Int
    Definition Classes
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    Annotations
    @native() @IntrinsicCandidate()
  12. def intersectCompact(b1: ReducibleBucket, b2: ReducibleBucket, k: Int, rule: Rule): ReducibleBucket

    Intersection of two buckets.

    Intersection of two buckets. The buckets must already have been compacted prior to calling this method (each k-mer must occur only once per bucket with tag > 0)

    b1

    Bucket 1

    b2

    Bucket 2

    k

    Length of k-mers

    rule

    reduction rule

  13. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  14. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  15. final def notify(): Unit
    Definition Classes
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    Annotations
    @native() @IntrinsicCandidate()
  16. final def notifyAll(): Unit
    Definition Classes
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    @native() @IntrinsicCandidate()
  17. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  18. def toString(): String
    Definition Classes
    AnyRef → Any
  19. def unionCompact(b1: Option[ReducibleBucket], b2: Option[ReducibleBucket], k: Int, rule: Rule): ReducibleBucket

    Union of two buckets.

    Union of two buckets. The buckets must already have been compacted prior to calling this method (each k-mer must occur only once per bucket with tag > 0)

    b1

    bucket 1

    b2

    bucket 2

    k

    length of k-mers

    rule

    reduction rule

  20. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
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    @throws( ... )
  21. final def wait(arg0: Long): Unit
    Definition Classes
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    @throws( ... ) @native()
  22. final def wait(): Unit
    Definition Classes
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    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
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    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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