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abstract class KmerBucket extends AnyRef

A bucket that maintains some number of super-mers and associated tags (e.g. counts) of each k-mer.

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ReducibleBucket
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Instance Constructors

  1. new KmerBucket(id: BucketId, supermers: Array[ZeroNTBitArray], tags: Array[Array[Tag]])

    id

    The ID/encoded minimizer of this bucket

    supermers

    Encoded super-mers in this bucket

    tags

    Tags (e.g. counts) of each k-mer in a 2D layout, rows corresponding to super-mers and columns corresponding to offsets within each super-mer.

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  20. def writeToSortedTable(k: Int, forwardOnly: Boolean): KmerTable
  21. def writeToTable(k: Int, forwardOnly: Boolean, sort: Boolean): KmerTable

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