case class FAIRecord(id: String, length: Long, start: Long, bpsPerLine: Int, bytesPerLine: Int) extends Product with Serializable
FAI (fasta index) record.
Example entries in a FAI file:
ENA|LR865458|LR865458.1 590561804 75 60 61 ENA|LR865459|LR865459.1 685720839 600404651 60 61 ENA|LR865460|LR865460.1 490910922 1297554246 60 61
- id
Sequence ID
- length
length in bps
- start
start position (byte offset in file)
- bpsPerLine
bps per line
- bytesPerLine
bytes per line
Linear Supertypes
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Instance Constructors
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new
FAIRecord(id: String, length: Long, start: Long, bpsPerLine: Int, bytesPerLine: Int)
- id
Sequence ID
- length
length in bps
- start
start position (byte offset in file)
- bpsPerLine
bps per line
- bytesPerLine
bytes per line
Value Members
-
final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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final
def
==(arg0: Any): Boolean
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final
def
asInstanceOf[T0]: T0
- Definition Classes
- Any
- val bpsPerLine: Int
- val bytesPerLine: Int
-
def
clone(): AnyRef
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- protected[lang]
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- @throws( ... ) @native()
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val
end: Long
byte offset of the final character in this sequence
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final
def
eq(arg0: AnyRef): Boolean
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def
finalize(): Unit
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final
def
getClass(): Class[_]
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- @native()
- val id: String
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final
def
isInstanceOf[T0]: Boolean
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- val length: Long
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final
def
ne(arg0: AnyRef): Boolean
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final
def
notify(): Unit
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final
def
notifyAll(): Unit
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- val start: Long
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final
def
synchronized[T0](arg0: ⇒ T0): T0
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final
def
wait(): Unit
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final
def
wait(arg0: Long, arg1: Int): Unit
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final
def
wait(arg0: Long): Unit
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