Packages

  • package root
    Definition Classes
    root
  • package com
    Definition Classes
    root
  • package jnpersson
    Definition Classes
    com
  • package discount

    Root package for this application.

    Root package for this application.

    Definition Classes
    jnpersson
  • package bucket

    Provides routines related to buckets/bins of k-mers.

    Provides routines related to buckets/bins of k-mers.

    Definition Classes
    discount
  • package fastdoop
    Definition Classes
    discount
  • package hash

    Provides classes for hashing k-mers and nucleotide sequences.

    Provides classes for hashing k-mers and nucleotide sequences. Hashing is done by identifying minimizers. Hashing all k-mers in a sequence thus corresponds to splitting the sequence into super-mers of length >= k (super k-mers) where all k-mers share the same minimizer.

    Definition Classes
    discount
  • package spark

    Provides classes and routines for running on Apache Spark.

    Provides classes and routines for running on Apache Spark. The main entry point is the Discount class. Once configured, it can be used to generate other classes of interest, such as GroupedSegments and CountedKmers.

    Definition Classes
    discount
  • package util

    Routines and classes for managing sequence and k-mer representations.

    Routines and classes for managing sequence and k-mer representations.

    Definition Classes
    discount
  • Frequency
  • Given
  • Lexicographic
  • MinimizerOrdering
  • Random
  • ReadSplitDemo
  • Signature
t

com.jnpersson.discount

MinimizerOrdering

sealed trait MinimizerOrdering extends AnyRef

A type of ordering of a minimizer set

Linear Supertypes
AnyRef, Any
Known Subclasses
Frequency, Given, Lexicographic, Random, Signature
Ordering
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Inherited
  1. MinimizerOrdering
  2. AnyRef
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