Packages

  • package root
    Definition Classes
    root
  • package com
    Definition Classes
    root
  • package jnpersson
    Definition Classes
    com
  • package discount

    Root package for this application.

    Root package for this application.

    Definition Classes
    jnpersson
  • package bucket

    Provides routines related to buckets/bins of k-mers.

    Provides routines related to buckets/bins of k-mers.

    Definition Classes
    discount
  • package fastdoop
    Definition Classes
    discount
  • package hash

    Provides classes for hashing k-mers and nucleotide sequences.

    Provides classes for hashing k-mers and nucleotide sequences. Hashing is done by identifying minimizers. Hashing all k-mers in a sequence thus corresponds to splitting the sequence into super-mers of length >= k (super k-mers) where all k-mers share the same minimizer.

    Definition Classes
    discount
  • package spark

    Provides classes and routines for running on Apache Spark.

    Provides classes and routines for running on Apache Spark. The main entry point is the Discount class. Once configured, it can be used to generate other classes of interest, such as GroupedSegments and CountedKmers.

    Definition Classes
    discount
  • package util

    Routines and classes for managing sequence and k-mer representations.

    Routines and classes for managing sequence and k-mer representations.

    Definition Classes
    discount
  • Frequency
  • Given
  • Lexicographic
  • MinimizerOrdering
  • Random
  • ReadSplitDemo
  • Signature
o

com.jnpersson.discount

Lexicographic

object Lexicographic extends MinimizerOrdering with Product with Serializable

Lexicographic (alphabetical) ordering

Linear Supertypes
Serializable, Serializable, Product, Equals, MinimizerOrdering, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. Lexicographic
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. MinimizerOrdering
  7. AnyRef
  8. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  6. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  7. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  8. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  9. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  10. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  11. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  12. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  13. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  14. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  15. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  16. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  17. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from MinimizerOrdering

Inherited from AnyRef

Inherited from Any

Ungrouped