Packages

c

com.jnpersson.kmers.util

NTBitDecoder

class NTBitDecoder extends AnyRef

Methods for decoding NT sequences with reusable buffers.

Linear Supertypes
AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. NTBitDecoder
  2. AnyRef
  3. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new NTBitDecoder()

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def bytesToString(bytes: Array[Byte], offset: Int, size: Int): NTSeq
  6. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @IntrinsicCandidate()
  7. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  8. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  9. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @IntrinsicCandidate()
  10. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @IntrinsicCandidate()
  11. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  12. def longToString(data: Long, size: Int): NTSeq

    Decode a previously encoded NT sequence to human-readable string form.

    Decode a previously encoded NT sequence to human-readable string form.

    data

    encoded data

    size

    number of letters to decode, starting from offset 0 (leftmost)

    returns

    decoded string

  13. def longsToString(data: Array[Long], offset: Int, size: Int): NTSeq

    Decode a previously encoded NT sequence to human-readable string form.

    Decode a previously encoded NT sequence to human-readable string form.

    data

    encoded data

    offset

    0-based offset in the data array to start from

    size

    number of letters to decode

    returns

    decoded string

  14. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  15. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @IntrinsicCandidate()
  16. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @IntrinsicCandidate()
  17. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  18. def toString(ar: NTBitArray): NTSeq
  19. def toString(): String
    Definition Classes
    AnyRef → Any
  20. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  21. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  22. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from AnyRef

Inherited from Any

Ungrouped