Packages

  • package root
    Definition Classes
    root
  • package com
    Definition Classes
    root
  • package jnpersson
    Definition Classes
    com
  • package kmers

    This package contains routines for processing k-mers, super-mers and minimizers.

    This package contains routines for processing k-mers, super-mers and minimizers.

    Definition Classes
    jnpersson
  • package util

    Routines and classes for managing sequence and k-mer representations.

    Routines and classes for managing sequence and k-mer representations.

    Definition Classes
    kmers
  • object KmerTable
    Definition Classes
    util
  • BuildParams

final case class BuildParams(k: Int, orientation: Orientation = Unchanged, sort: Boolean = true) extends Product with Serializable

Parameters for KmerTable construction

k

k

orientation

Orientation filter for k-mers

sort

Whether to sort the k-mers

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Serializable, Serializable, Product, Equals, AnyRef, Any
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  1. BuildParams
  2. Serializable
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Instance Constructors

  1. new BuildParams(k: Int, orientation: Orientation = Unchanged, sort: Boolean = true)

    k

    k

    orientation

    Orientation filter for k-mers

    sort

    Whether to sort the k-mers

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @IntrinsicCandidate()
  6. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  7. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @IntrinsicCandidate()
  8. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  9. val k: Int
  10. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  11. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @IntrinsicCandidate()
  12. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @IntrinsicCandidate()
  13. val orientation: Orientation
  14. val sort: Boolean
  15. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  16. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  17. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  18. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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