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com.jnpersson.kmers.input

DirectInputs

object DirectInputs

Routines for parsing input from a DataFrame directly.

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  8. def forDataFrame(data: DataFrame)(implicit spark: SparkSession): InputReader

    Read inputs directly from a DataFrame.

    Read inputs directly from a DataFrame. The DataFrame must have the following columns: header, nucleotides, (optionally) nucleotides2

  9. def forPairs(data1: DataFrame, data2: DataFrame)(implicit spark: SparkSession): PairedInputReader

    Read paired-end reads directly from DataFrames.

    Read paired-end reads directly from DataFrames. The DataFrames must have the following columns: header, nucleotides, (optionally) nucleotides2

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