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object CountedKmers

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  8. def findNonzeroIntervals(tags: Array[Int], from: Int = 0, acc: List[(Int, Int)] = Nil): List[(Int, Int)]

    Traverse an array of tags, finding maximally long segments without zeroes.

    Traverse an array of tags, finding maximally long segments without zeroes.

    tags

    tags (e.g. k-mer counts)

    from

    starting index in tags array

    acc

    accumulator

    returns

    pairs of (start, end) where start is inclusive and end is not inclusive

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